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JOURNALS / REVISTAS CIENTÍFICAS

Neuron

Nature Neuroscience

The Journal of Neuroscience

Learning and Memory

Frontiers in Neuroscience

Brain Research Bulletin

INSTITUTIONS / ORGANISMOS PÚBLICOS

Instituto de Neurociencias de Alicante (UMH-CSIC)

Consejo Superior de Investigaciones Científicas (CSIC)

Universidad Miguel Hernández (UMH)

Ministerio de Ciencia e Innovación (MICINN)

Generalitat Valenciana - Conselleria d'Educació

DATABASES

Addgene: Plasmid database

Allen Brain Atlas: Search of gene profiles in ISH data

APID (Agile Protein Interaction DataAnalizer): Integration of protein-protein interaction databases (BIND, BioGRID, DIP, HPRD, IntAct, MINT)

ArrayExpress: Depository of microarray and high-throughput sequencing data. Search of gene profiles in deposited experiments

BEARR: Batch extraction and analysis of cis regulatory elements in gene promoters

BGEM: Search of gene profiles in ISH data

Bioconductor: Tools for the analysis and comprehension of high-throughput genomic data

BioGPS: Search of gene profiles for tissue and cell types in microarray data

BioMart: Query-oriented data management system

BioVenn: Tool for generating Venn diagrams with proportional areas

BLAST: Basic Local Alignment Search Tool

CateGOrizer: Tool for categorizing and counting GO terms based on a Slim annotation

ChIP-Seq Analysis Server: Tools for the analysis of ChIP-seq data

ClustalW2: Multiple sequence alignment tool

CREB Target Gene Database

DAVID: Functional annotation and Gene Set Enrichment analysis

DAVID v6.7: Comprehensive set of functional annotation tools for investigators to understand biological meaning behind large list of genes

Directory of Bioinformatics Software and Molecular Biology: Basic tools in Molecular Biology

eGOn v2.0: Functional annotation and Gene Set Enrichment analysis

Ensembl: Genome database for vertebrates and other eukaryotic species

ExPASy Proteomics Server: Analysis of protein sequences and structures as well as 2-D PAGE

g-profiler: Functional profiling of gene lists from large-scale experiments

Gene Regulation (Databases)

Gene Regulation (Tools): Predictive tools of TFBS

GenePaint: Search of gene profiles in ISH data

Genomatix: Online software suite for genome-wide data analysis. Only some functionalities are free of charge

GENSAT: Search of gene profiles in ISH data

GEO DataSets: Depository of microarray and high-throughput sequencing data

GEO Profiles: Search of gene profiles in deposited experiments

Giles Carpentier Web: Image analysis tools in biology and biochemistry using ImageJ

GLITR: Extracting transcription factor targets from ChIP-Seq data

HUGO: Gene name Nomenclature Committee

iHOP: Information hyperlinked over proteins

JASPAR: The high-quality transcription factor binding profile database

KEGG: Kyoto Encyclopedia of Genes and Genomes

MACS: Model-based Analysis for ChIP-Seq

Mammalian Phenotype Ontology browser: Ontology of mouse genes annotated to disease-related phenotypes

MGI: Mouse genome and mouse mutants Databases

microRNA.org: MicroRNA target site prediction

miRbase: MicroRNA database

miRWalk: MicroRNA target database

Mouse Brain Atlases

Mouse genome project at BCM: Mouse genome and strains

Mouse Phenome Database

NADtranscriptomics: Neuronal activity-driven gene expression Database

NEBcutter v2.0: Tool for analyzing DNA sequences and restriction sites

Nervous System Database

NetAffx™ Analysis Center: Correlation of GeneChip® array results with array design and annotation information

neuromice.org: Distribution of mouse lines

NIA Mouse Gene Index: Gene Index mouse mm9

oPOSSUM: Detection of over-represented transcription factor binding sites in the promoters of sets of genes

Pathway Interaction Database: Biomolecular interactions and cellular processes assembled into authoritative human signaling pathways

PCR links: Lot of links related to PCR

PicTar: MicroRNA target site prediction

PIR [Protein Information Resource]: Protein-protein interaction

Primer3Plus: Selection of primers for a DNA sequence

Pscan: Finding Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes

PSORT: Yool for predicting the subcellular localization of a protein based on its sequence

qPrimerDepot: qRT-PCR primer database

RE1db: NRSF/REST Target Gene Database

RefSeq: Comprehensive, integrated, non-redundant, well-annotated set of sequences, including genomic DNA, transcripts, and proteins

RNAhybrid: Tool for finding the least energy interaction between two RNA molecules

SABiosciences (Qiagen): Collection of singnaling pathways

SEQanswers: NGS community

SICER: A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

SMART: Prediction of protein domains

TargetScan: MicroRNA target site prediction

The MEME Suite: Motif-base sequence analysis tool

UCSC Genome Browser: This site contains the reference sequence and working draft assemblies for a large collection of genomes

Venny: Tool for Venn diagram generation

W-ChIPeaks:A comprehensive web application for processing ChIP-chip and ChIP-seq data

WEB-based GEne SeT AnaLysis Toolkit: Comprehensive set of functional annotation tools for investigators to understand biological meaning behind large list of genes

Webgestalt Gene Set Analysis Toolkit v2: Functional annotation and Gene Set Enrichment analysis

Xtractor: Biomedical Facts Categorized


 

 

 

Instituto de Neurociencias
Consejo Superior de Investigaciones Científicas (CSIC)
Universidad Miguel Hernández (UMH)

Av. Santiago Ramón y Cajal s/n
03550 San Juan de Alicante

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